Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116850
Name   oriT_PLA7 in_silico
Organism   Lactiplantibacillus carotarum strain AMBF275
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OX443577 (20838..20858 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_PLA7
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10747 GenBank   WP_130846923
Name   mobQ_P6S16_RS17530_PLA7 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80548.35 Da        Isoelectric Point: 9.6140

>WP_130846923.1 MULTISPECIES: MobQ family relaxase [Lactiplantibacillus]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEDRHYFYARSVMPESFILTPKNAPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVNWDKKEKIIEWRHNWANSVNQVLAQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRYERKAFNQQVKTYRKSKASYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYITLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLTRQLLAFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGDFNELPLIKQEQAYTAVMYYDPALKPCKVEAIAQWQENPPRVFNTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKANPTIKNSQIEKIQQQLKAQRAKDDQYRKANMGHYQPLNYKPVSPDY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   17283 GenBank   NZ_OX443577
Plasmid name   PLA7 Incompatibility group   -
Plasmid size   26145 bp Coordinate of oriT [Strand]   20838..20858 [+]
Host baterium   Lactiplantibacillus carotarum strain AMBF275

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -