Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116844
Name   oriT_paAMD1 in_silico
Organism   Aminobacter niigataensis strain MD1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OX341518 (82922..82953 [+], 32 nt)
oriT length   32 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 32 nt

>oriT_paAMD1
GTCGCGACAGCGACGTATAATTGCGCCCTTGG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10742 GenBank   WP_268738272
Name   traA_O1Y97_RS24695_paAMD1 insolico UniProt ID   _
Length   1100 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 1100 a.a.        Molecular weight: 122641.10 Da        Isoelectric Point: 9.8673

>WP_268738272.1 Ti-type conjugative transfer relaxase TraA [Aminobacter niigataensis]
MAVPHFSVAIVSRGNGRSAVLSAAYRHCAKMEYEREARSIDYTRKQGLLHEEFLAPPDAPQWVSSLIADR
SVSGAAEAFWNKVEAFEKRSDAQLAKDITMALPLELSAKQNIALVRDFVEQHILAKGMVADWVYHDAPGN
PHVHLMMTLRPLTEDGFGAKKIAVIGENGEVLRNQAGKIVYELWAGGVADFTAFRDAWFTTQNKHLALGG
IDLRVDGRSYAERGIDLVPTIHVGVGAQAIQRKSVSDGSQPCLERIELFEARRKENAGRILKRPEIVLEM
ISTEKSVFDERDIAKILHRYVDDAGTFQHLMVRILQSPEVLRIERNGIDLATGERLRSRYTTRELIRLEA
KMAKQSLRLLQRATHGVQETVLDSVFARHSRLSQEQRVAIEHVAGAGKIAAVVGRAGAGKTTMMKAAREA
WELAGYRVVGAALAGKAAEGLEKEAGIISRTLASWELRWQEGRDLLDARTVFVLDEAGMVASKQMALVVE
AATRAGAKLVLIGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQRDDWMRAASLDLARGRVDEAVSAYR
QHGRVLGSELKAQAIDSLIADWNRDYDPAETSLILAHLRRDVRILNDMARERLVERGIVGEGHGFRTEDG
LRQFDAGDQIVFLKNETSLGVKNGMIGRVMEAAANRIVAVIGEGEHRRLVTVEQRFYRNIDHGYATTIHK
SQGATVDRVKVLASLSLDRHLTYVAMTRHREDMALYYGRRSFGLNGGLIAILARRNAKETTLDYEHGTLY
RQALRFAENRGLNFVRIARTLVRDRLDWILRQRQQIADLAQQMRAHGERLGLLQPPSTQIWKEAEPLVAG
VTLFAKSLADVVEERLLAAPALAKQWDEVSTRFRYVFADPETAFRSMNFDAVLTDAKVAKQTLDRLVSEP
GSIGPLKGRAGILASRADKEARRVAEVNVPALKRDIERYLQLRQTAAERIEKEEQSLRHRVSIDIPALSP
AARSVLEKIRDAIDRNDLAAALGHALSSPEAKLEIDGFNRAVTERFGERALLANTAREPSGTLFDKAAAG
LRPGGREKLREAWPVMRAAQQIAAHERTVQTLRQGEHVRMAQRQSTAWKQ

  Protein domains


Predicted by InterproScan.

AAA domain (AAA_30)

(382-565)

BID domain of Bartonella effector protein (Bep) (Bep_C_terminal)

(855-951)

MobA/MobL family (MobA_MobL)

(17-243)


  Protein structure



No available structure.




Host bacterium

ID   17277 GenBank   NZ_OX341518
Plasmid name   paAMD1 Incompatibility group   -
Plasmid size   363670 bp Coordinate of oriT [Strand]   82922..82953 [+]
Host baterium   Aminobacter niigataensis strain MD1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -