Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116805 |
| Name | oriT_FDAARGOS_1|unnamed1  |
| Organism | Staphylococcus aureus strain FDAARGOS_1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP026969 (6639..6823 [+], 185 nt) |
| oriT length | 185 nt |
| IRs (inverted repeats) | 113..119, 126..132 (TCCCCAT..ATGGGGA) 96..102, 106..112 (ATCTGGC..GCCAGAT) 54..61, 68..75 (TTTTTATG..CATAAAAA) 29..35, 40..46 (TGTCACA..TGTGACA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 185 nt
>oriT_FDAARGOS_1|unnamed1
TGTCTTATTTTTGTGACACAATATATTGTGTCACAAAAGTGTGACATTGGAGCTTTTTATGACCCCACATAAAAACATCTCGGATGTCTTGAAATATCTGGCTTTGCCAGATTCCCCATTCGTTGATGGGGACAAATTCCTCTTATGCTCTTACGGAGTTTTTAGGGATAAATTAAAATTTCTAA
TGTCTTATTTTTGTGACACAATATATTGTGTCACAAAAGTGTGACATTGGAGCTTTTTATGACCCCACATAAAAACATCTCGGATGTCTTGAAATATCTGGCTTTGCCAGATTCCCCATTCGTTGATGGGGACAAATTCCTCTTATGCTCTTACGGAGTTTTTAGGGATAAATTAAAATTTCTAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 17238 | GenBank | NZ_CP026969 |
| Plasmid name | FDAARGOS_1|unnamed1 | Incompatibility group | - |
| Plasmid size | 9124 bp | Coordinate of oriT [Strand] | 6639..6823 [+] |
| Host baterium | Staphylococcus aureus strain FDAARGOS_1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |