Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116791
• Name: oriT_pLHC5-1-6.9k
• Organism: Citrobacter werkmanii strain LHC5-1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP084292 (5317..5358 [+], 42 nt)
• oriT length: 42 nt
• IRs (inverted repeats): 7..13, 25..31 (CGTTTCT..AGAAACG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 42 nt

>oriT_pLHC5-1-6.9k
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGC

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobA_LD024_RS23870_pLHC5-1-6.9k

• ID: 10712
• GenBank: WP_227410536
• Name: mobA_LD024_RS23870_pLHC5-1-6.9k
• UniProt ID: _
• Length: 371 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 371 a.a.
• Molecular weight: 43181.80 Da
• Isoelectric Point: 6.8374

>WP_227410536.1 mobilization protein MobA [Citrobacter werkmanii]
MASYHLSVKTGGKGNANPHADYIAREGKYAREKDSDLEHKESGNMPAWAAHKPSEFWKAADTSERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERLNDGIPRDP
QQYFKRANTKEPERGGAKKARFGETPTERKEHLVAQRERWADLQNKYQERYQHADRVDARSLKVQGIDRE
PERHLGAGKVQRFDSAQLQAILERREAERQVQQSRDERDSVIDVTTSLREALAERDSLTPKQEQKSEPEQ
EAHSGRTFDFEKEPDKLNTLVSDAMKDIQEEIDLQSLVNDAMAEFQGIHQEMERQRERERLVETQRQQEK
ERQRLAEQKRQKPDKGWSFSR

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (42-218)

Protein structure

No available structure.

Host bacterium

• ID: 17224
• GenBank: NZ_CP084292
• Plasmid name: pLHC5-1-6.9k
• Incompatibility group: ColE10
• Plasmid size: 6938 bp
• Coordinate of oriT [Strand]: 5317..5358 [+]
• Host baterium: Citrobacter werkmanii strain LHC5-1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -