Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116783
Name   oriT_pCK401A in_silico
Organism   Lactiplantibacillus paraplantarum strain CK401
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP053338 (10715..10735 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pCK401A
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10707 GenBank   WP_171284687
Name   mobQ_CK401_RS14955_pCK401A insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80272.95 Da        Isoelectric Point: 9.4613

>WP_171284687.1 MobQ family relaxase [Lactiplantibacillus paraplantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDQEDRHYFYARSVIPESFILTPKNAPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVNWDKKEKIIEWRHNWAVSVNQVLEQKNIP
DRISEKSFTEQGISDTPMQHEGINSKRHERKVFNQQVKSYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKRADELLNKVV
DRTTKKLYPELDFEQTTAAERQKLIKETNSEQTIFKGSELNERLMNIRDDLLAQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKANIGHYQPLNYKPVSPDY
YLKTAFSNAIMTALYARDEDYERQKQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   17216 GenBank   NZ_CP053338
Plasmid name   pCK401A Incompatibility group   -
Plasmid size   15102 bp Coordinate of oriT [Strand]   10715..10735 [+]
Host baterium   Lactiplantibacillus paraplantarum strain CK401

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21