Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116777
Name   oriT_pLp02-2 in_silico
Organism   Lacticaseibacillus paracasei strain Lp02
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP039709 (38089..38109 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pLp02-2
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10704 GenBank   WP_173959350
Name   mobQ_FBD73_RS14745_pLp02-2 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80265.98 Da        Isoelectric Point: 9.5639

>WP_173959350.1 MobQ family relaxase [Lacticaseibacillus paracasei]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYPRSIMPESFILTPKNSPEWASDREQLWN
EVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAASVNQALEQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHEVKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLTRQLLTFTKRPYVGWKLL
MQQEKEVKIKLKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAAKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKENIGHYQPLNYKPVSPSY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   17210 GenBank   NZ_CP039709
Plasmid name   pLp02-2 Incompatibility group   -
Plasmid size   47041 bp Coordinate of oriT [Strand]   38089..38109 [+]
Host baterium   Lacticaseibacillus paracasei strain Lp02

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -