Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116764
Name   oriT_pUCCLBBS449_I in_silico
Organism   Levilactobacillus brevis strain UCCLBBS449
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP031207 (2695..2731 [+], 37 nt)
oriT length   37 nt
IRs (inverted repeats)      2..7, 13..18  (ACTTTA..TAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 37 nt

>oriT_pUCCLBBS449_I
CACTTTATCTTGTAAAGTATAGTGGGCTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10693 GenBank   WP_139592759
Name   mobV_UCCLBBS449_RS13840_pUCCLBBS449_I insolico UniProt ID   _
Length   361 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 361 a.a.        Molecular weight: 42022.27 Da        Isoelectric Point: 7.3684

>WP_139592759.1 MobV family relaxase [Levilactobacillus brevis]
MSFAVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDASRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWIITSDKDFFEQLDEAETRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQHIQEELPQYLKENGFDVQRGNKNKERKNLSVPEYKAMREELKKIETEKQETQ
AKLADTKKQLDEIRPRDTKKIASKPTLMNKNKVTVDKYDLVDLEQRAVTSDAYNFEKIHLEVENHSLRND
LSEAKGRNYELRKENERLQKLVGTLQGIIRNVDEFLHKKLGINLPEKWLERAGLKEPSKKAPESSQELDR
HKSDELGGPHL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   17197 GenBank   NZ_CP031207
Plasmid name   pUCCLBBS449_I Incompatibility group   -
Plasmid size   2763 bp Coordinate of oriT [Strand]   2695..2731 [+]
Host baterium   Levilactobacillus brevis strain UCCLBBS449

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -