Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116763 |
| Name | oriT_pUCCLBBS449_F  |
| Organism | Levilactobacillus brevis strain UCCLBBS449 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP031204 (4589..4725 [+], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_pUCCLBBS449_F
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTCCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTCCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATTTTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10692 | GenBank | WP_139592753 |
| Name | Relaxase_UCCLBBS449_RS13750_pUCCLBBS449_F |
UniProt ID | _ |
| Length | 410 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 410 a.a. Molecular weight: 47826.34 Da Isoelectric Point: 7.3195
>WP_139592753.1 relaxase/mobilization nuclease domain-containing protein [Levilactobacillus brevis]
MATIAKISNGASAASAINYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VLRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASQENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQEVSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
TRQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTTNRFIDTIKQFAGRVPELTQ
RVTRKLKQTKEKIFDDFERRFSKDMKNYEQEQQKSLEKQANRDVQSEKKPTKDHDWGMSR
MATIAKISNGASAASAINYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VLRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASQENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQEVSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
TRQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTTNRFIDTIKQFAGRVPELTQ
RVTRKLKQTKEKIFDDFERRFSKDMKNYEQEQQKSLEKQANRDVQSEKKPTKDHDWGMSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 17196 | GenBank | NZ_CP031204 |
| Plasmid name | pUCCLBBS449_F | Incompatibility group | - |
| Plasmid size | 8042 bp | Coordinate of oriT [Strand] | 4589..4725 [+] |
| Host baterium | Levilactobacillus brevis strain UCCLBBS449 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |