Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116760
• Name: oriT_pSA-CC169-2
• Organism: Staphylococcus aureus strain CC169
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CM003523 (6082..6201 [-], 120 nt)
• oriT length: 120 nt
• IRs (inverted repeats): 52..58, 62..68 (TTGGGGA..TCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 120 nt

>oriT_pSA-CC169-2
AGTGGCTAGCAATTAGCCACTATTTTTTCGCCAGAAAAAATCCTAAGGGGCTTGGGGAATATCCCCAAAAAGCAGGCGATGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_AL076_RS00150_pSA-CC169-2

• ID: 10690
• GenBank: WP_000246204
• Name: Relaxase_AL076_RS00150_pSA-CC169-2
• UniProt ID: _
• Length: 335 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 335 a.a.
• Molecular weight: 38770.60 Da
• Isoelectric Point: 8.2694

>WP_000246204.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus aureus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQAFKPDEVTPE
QCNQLGLELAEKFAPNHQVAVYTHNDTDHVHNHIVINSINLETGKKFNNNKQALRDLRNFNDEVCRNHGL
SVPEKDTARLRYTQTEKAIADPNIKSTAQYSWKDEIREAIDQSQATNIDELKTHLSQYGIEIERVTPKSI
TYRHLAEDKKVRGRRLGENYNKGGIEDGFERQIQRRQQERDSEHDYQPKRRTSNRDESTERDTSITQSDW
DRFAKDTNELERSRKAAESARLAHEKARRDREERIQAERATRKNINNDRDHGYEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 17193
• GenBank: NZ_CM003523
• Plasmid name: pSA-CC169-2
• Incompatibility group: -
• Plasmid size: 8033 bp
• Coordinate of oriT [Strand]: 6082..6201 [-]
• Host baterium: Staphylococcus aureus strain CC169

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -