Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116757 |
| Name | oriT_NW115|unnamed2  |
| Organism | Yersinia enterocolitica strain NW115 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP107084 (2132..2189 [-], 58 nt) |
| oriT length | 58 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 58 nt
>oriT_NW115|unnamed2
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCT
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10688 | GenBank | WP_045289150 |
| Name | Relaxase_N4W05_RS20585_NW115|unnamed2 |
UniProt ID | _ |
| Length | 228 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 228 a.a. Molecular weight: 25071.42 Da Isoelectric Point: 9.2120
>WP_045289150.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein, partial [Enterobacterales]
MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPDEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRVLVSPSALPEAKQEAAQAITSGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGA
MIVKFHPRGRGGGGGPVDYLLGKDRQRDGASVLQGKPDEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRVLVSPSALPEAKQEAAQAITSGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGA
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 6296 | GenBank | WP_025367738 |
| Name | WP_025367738_NW115|unnamed2 |
UniProt ID | A0A626CA34 |
| Length | 161 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 161 a.a. Molecular weight: 18002.58 Da Isoelectric Point: 9.7366
>WP_025367738.1 MULTISPECIES: MbeB family mobilization protein [Bacteria]
MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMVSQTWLTIVLVSALLIASSAGILWWQGQQILENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCV
RVNPEAGQFGEDSSWMILAGK
MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMVSQTWLTIVLVSALLIASSAGILWWQGQQILENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCV
RVNPEAGQFGEDSSWMILAGK
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A626CA34 |
| ID | 6297 | GenBank | WP_004193914 |
| Name | WP_004193914_NW115|unnamed2 |
UniProt ID | A0A8T3UXZ2 |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11783.55 Da Isoelectric Point: 7.8963
>WP_004193914.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQIVAALMAIDAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQIVAALMAIDAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 17190 | GenBank | NZ_CP107084 |
| Plasmid name | NW115|unnamed2 | Incompatibility group | ColRNAI |
| Plasmid size | 3300 bp | Coordinate of oriT [Strand] | 2132..2189 [-] |
| Host baterium | Yersinia enterocolitica strain NW115 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |