Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116688
Name   oriT_pUC109C in_silico
Organism   Lactococcus cremoris strain UC109
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP034576 (26738..26874 [+], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_pUC109C
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGAAAGCTTGCAGTATTTATGGGTTTATATTTTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   12437 GenBank   WP_021214672
Name   tcpA_LLUC109_RS12330_pUC109C insolico UniProt ID   _
Length   358 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 358 a.a.        Molecular weight: 40830.21 Da        Isoelectric Point: 7.4643

>WP_021214672.1 MULTISPECIES: cell division protein FtsK [Lactococcus]
MTNSQLALYLLQSLNMALGSQIEGETSYTNSFDVKVQEDGFLFLPRMPSGYIIDNDLYFKIFLIANACLY
PRYTLLKQNSAYFIPINTDDIHTQRGLFFPWKVGISKRLVINDLDFFVATQHKPYIPIMENLKLNYDNVT
SIAIAGNSGSGKSYTLTYFLSMLKPLSDLIIIDPKFDTPSRWARENKIPVIHPERNRSKSDFVAEINESL
SQTLNIIYKRQEILYDNPRHQFSHLTIVIDEVLALSEGTNKNIKDSFFSLISQIALLGRATKVHLLLVSQ
RFDYQSIPVSVREQLNVLIQIGNINKKTVQFLFPDLDPEGIVIPLGKGTGLIQIIDNEHPYQVLPLLCPT
YYTKKGIL

  Protein domains



No domain identified.


  Protein structure



No available structure.




Host bacterium

ID   17121 GenBank   NZ_CP034576
Plasmid name   pUC109C Incompatibility group   -
Plasmid size   27874 bp Coordinate of oriT [Strand]   26738..26874 [+]
Host baterium   Lactococcus cremoris strain UC109

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -