Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116679
• Name: oriT_C2-1|p2
• Organism: Ligilactobacillus salivarius strain C2-1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP137610 (18665..18715 [+], 51 nt)
• oriT length: 51 nt
• IRs (inverted repeats): 13..18, 25..30 (TCCCAC..GTGGGA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 51 nt

>oriT_C2-1|p2
GATACTATCGGCTCCCACGCACCTGTGGGACCATTTTCTCTTATGCTCTTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_R6M76_RS08950_C2-1|p2

• ID: 10640
• GenBank: WP_318151690
• Name: mobQ_R6M76_RS08950_C2-1|p2
• UniProt ID: _
• Length: 420 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 420 a.a.
• Molecular weight: 49642.55 Da
• Isoelectric Point: 10.8169

>WP_318151690.1 MobQ family relaxase [Ligilactobacillus salivarius]
MAIFHLSVKIISRSSGRSAIAAAAYRAGEKLKNEENGKTHDFSKKKGVVYSEIQLPENAPSEYKDRQTLW
NKVQEIEKRADAQLAREVEVALPQELDRKKQIELAHNYIQEQFVDKGMIADWSIHDKGDGNPHAHIMLTT
RSLKKDGSWAPKQKSTYILDENREKIPQIDPKTGKQKIGARGRKMWKRTTVTYNDWNNRDNVELWRNEWA
KQVNHYLEPSKKIDNRSYKRQGITKMPTIHEGYVAREIEKRGGSSDRIETNKMIKKINSAKNNIIILLDK
IERMKIRRKQLKQLRERAIKAILRIIRNKEQQYQLFKKKLDEWEGQLNEQFNRQNKRNDGRKRKTSSEDT
TIRIRKRGIERRERDFKLREQEIKRTSDKSIKRRDLSKGHENAERSSKNHRSGRETQYYQGFDKPKGRGM

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-251)

Protein structure

No available structure.

Host bacterium

• ID: 17112
• GenBank: NZ_CP137610
• Plasmid name: C2-1|p2
• Incompatibility group: -
• Plasmid size: 35582 bp
• Coordinate of oriT [Strand]: 18665..18715 [+]
• Host baterium: Ligilactobacillus salivarius strain C2-1

Cargo genes

• Drug resistance gene: fexB, poxtA
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -