Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116602 |
| Name | oriT_pCPCPS2a_1  |
| Organism | Clostridium perfringens strain CPS 2a |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP075904 (3637..3785 [-], 149 nt) |
| oriT length | 149 nt |
| IRs (inverted repeats) | 132..137, 141..146 (ATACAT..ATGTAT) 116..122, 136..142 (ATTATAT..ATATAAT) 118..124, 128..134 (TATATAT..ATATATA) 120..126, 128..134 (TATATAT..ATATATA) 122..127, 129..134 (TATATA..TATATA) 102..109, 123..130 (TATTATAT..ATATAATA) 111..117, 121..127 (TATATAT..ATATATA) 111..117, 119..125 (TATATAT..ATATATA) 111..116, 118..123 (TATATA..TATATA) 20..25, 28..33 (TTTAAA..TTTAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 149 nt
>oriT_pCPCPS2a_1
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAAAAGTTCCCTGTATTAATATAAGTATTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATATGTATATATTATATATATAATATATACATATAATGTATTGG
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAAAAGTTCCCTGTATTAATATAAGTATTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATATGTATATATTATATATATAATATATACATATAATGTATTGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 12360 | GenBank | WP_224375785 |
| Name | tcpA_KLF27_RS14350_pCPCPS2a_1 |
UniProt ID | _ |
| Length | 522 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 522 a.a. Molecular weight: 59743.85 Da Isoelectric Point: 6.1154
>WP_224375785.1 FtsK/SpoIIIE domain-containing protein [Clostridium perfringens]
MSSDWEKKVNQEIDNGANAIINEIANVLRIFFFRVGLGFKKSWKNKKFFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDNGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGKTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGCISTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRIYGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRRDEIEDNKVVLDLNKENLINNVNEKFEIKEVKYID
PNIENEDDIKVENFEEQNKTENLKSTINDDYE
MSSDWEKKVNQEIDNGANAIINEIANVLRIFFFRVGLGFKKSWKNKKFFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDNGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGKTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGCISTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRIYGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRRDEIEDNKVVLDLNKENLINNVNEKFEIKEVKYID
PNIENEDDIKVENFEEQNKTENLKSTINDDYE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 17035 | GenBank | NZ_CP075904 |
| Plasmid name | pCPCPS2a_1 | Incompatibility group | - |
| Plasmid size | 36496 bp | Coordinate of oriT [Strand] | 3637..3785 [-] |
| Host baterium | Clostridium perfringens strain CPS 2a |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | cna |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA7 |