Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116582 |
| Name | oriT_pTB31P2  |
| Organism | Escherichia fergusonii strain EF31 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP070953 (32106..32390 [-], 285 nt) |
| oriT length | 285 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 285 nt
>oriT_pTB31P2
GGTTATTGCTGCTTTCTGCCGATAACAGTGCAAGTTTTGCGATTTTTTTAAGCGCTTCACAGTTCGTTAGCAAGCTCAGTTTTTTTTGATAAAATTCTGGTCAGTTTGTTTAAAAAGTGTTACAAGTAAGGCGAATGGTTGAATGGTTAGTTTTAAGACTCAAATCGGCAGTATTAAAATTCCAAAAGTAGCTTTTCATACTTCAAAAAACCAAACTTTAATTTCATGTAGAAGAGTTGTACTATTGTATTGACTCAAGGACAATCCGACATGTCAGAATCAGAT
GGTTATTGCTGCTTTCTGCCGATAACAGTGCAAGTTTTGCGATTTTTTTAAGCGCTTCACAGTTCGTTAGCAAGCTCAGTTTTTTTTGATAAAATTCTGGTCAGTTTGTTTAAAAAGTGTTACAAGTAAGGCGAATGGTTGAATGGTTAGTTTTAAGACTCAAATCGGCAGTATTAAAATTCCAAAAGTAGCTTTTCATACTTCAAAAAACCAAACTTTAATTTCATGTAGAAGAGTTGTACTATTGTATTGACTCAAGGACAATCCGACATGTCAGAATCAGAT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10578 | GenBank | WP_223663901 |
| Name | mobH_JW961_RS22600_pTB31P2 |
UniProt ID | _ |
| Length | 479 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 479 a.a. Molecular weight: 55141.05 Da Isoelectric Point: 6.9412
>WP_223663901.1 MULTISPECIES: MobH family relaxase, partial [Escherichia]
MNFRAIFLSMQRVLGIFSRRENDVVELIKQDPSSLSPFAQIVGDQKYTVPDHPNLEVLKFIEYPTRPAGI
QTFNEQSILSLYRDKLHSISMMLAISDGDIREDAFTFTNLVLKPLIEYIRWIHLLPASENHHHNGIGGLL
SHSLEVAMISLKNANHSELRPIGYQDEEVIRRKVYLYAAFICGLVHDAGKVYDIDIVSLNLSKTLTWAPS
SQSLLDWARENNVVEYEIHWRKRIHNQHNIWSSVFLERILDPVCMSFLDRVKKERVYAKMVTALNVYNDG
NDFLSKCVRTSDYYSTGTDLNVLRDPIMGLRSNDAAARAIGTIKHNFTSINNYKSKPMHLIIVNGEVYLN
ENAFLDFVLSDFAAHKFNFPQGNAGKTVLVESLVQRGYVEPYDDERVVHYFIPGTYSENEIASIFRNGIG
KLEFYNLLKLRWIGLIFDSYKIPDSVPGLFSVNANKYFIYIDEQKTVTEYRRPVMTPTY
MNFRAIFLSMQRVLGIFSRRENDVVELIKQDPSSLSPFAQIVGDQKYTVPDHPNLEVLKFIEYPTRPAGI
QTFNEQSILSLYRDKLHSISMMLAISDGDIREDAFTFTNLVLKPLIEYIRWIHLLPASENHHHNGIGGLL
SHSLEVAMISLKNANHSELRPIGYQDEEVIRRKVYLYAAFICGLVHDAGKVYDIDIVSLNLSKTLTWAPS
SQSLLDWARENNVVEYEIHWRKRIHNQHNIWSSVFLERILDPVCMSFLDRVKKERVYAKMVTALNVYNDG
NDFLSKCVRTSDYYSTGTDLNVLRDPIMGLRSNDAAARAIGTIKHNFTSINNYKSKPMHLIIVNGEVYLN
ENAFLDFVLSDFAAHKFNFPQGNAGKTVLVESLVQRGYVEPYDDERVVHYFIPGTYSENEIASIFRNGIG
KLEFYNLLKLRWIGLIFDSYKIPDSVPGLFSVNANKYFIYIDEQKTVTEYRRPVMTPTY
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 17015 | GenBank | NZ_CP070953 |
| Plasmid name | pTB31P2 | Incompatibility group | - |
| Plasmid size | 124087 bp | Coordinate of oriT [Strand] | 32106..32390 [-] |
| Host baterium | Escherichia fergusonii strain EF31 |
Cargo genes
| Drug resistance gene | tet(A) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |