Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116575 |
| Name | oriT_G121|p002F  |
| Organism | Lactococcus lactis subsp. lactis strain G121 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP053673 (903..1039 [+], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_G121|p002F
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCTACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCTACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10575 | GenBank | WP_179108011 |
| Name | Relaxase_HPC60_RS13490_G121|p002F |
UniProt ID | _ |
| Length | 410 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 410 a.a. Molecular weight: 47870.36 Da Isoelectric Point: 7.6923
>WP_179108011.1 relaxase/mobilization nuclease domain-containing protein [Lactococcus lactis]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPSKEHQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKERLSDNGVILSERGQTFSYAFLDTNNKQRRARETRLGSDFGRETILHELENR
TRQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTTNRFIDTIKQFAGRVPELTQ
RVTRKLKQTKEKILENFERRFSKDMKNYEQEQQQNLEKQTHRDVQSEKKPTKDHDRGMSR
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPSKEHQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKERLSDNGVILSERGQTFSYAFLDTNNKQRRARETRLGSDFGRETILHELENR
TRQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTTNRFIDTIKQFAGRVPELTQ
RVTRKLKQTKEKILENFERRFSKDMKNYEQEQQQNLEKQTHRDVQSEKKPTKDHDRGMSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 17008 | GenBank | NZ_CP053673 |
| Plasmid name | G121|p002F | Incompatibility group | - |
| Plasmid size | 11744 bp | Coordinate of oriT [Strand] | 903..1039 [+] |
| Host baterium | Lactococcus lactis subsp. lactis strain G121 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |