Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116480
Name   oriT_pPFS in_silico
Organism   Pseudomonas fragi strain EH-H1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP129921 (1319..1353 [-], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      6..11, 15..20  (CTTTGC..GCAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 35 nt

>oriT_pPFS
ACGATCTTTGCGAAGCAAAGTCTAGTGAGTACACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10530 GenBank   WP_106120407
Name   mobV_Q1A94_RS24925_pPFS insolico UniProt ID   _
Length   323 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 323 a.a.        Molecular weight: 36005.00 Da        Isoelectric Point: 10.1256

>WP_106120407.1 MULTISPECIES: MobV family relaxase [Pseudomonas]
MAYAIMRAKKLANMGSVAASMQHCYRERETHNADQERTPDNQHLVAKSTDEAMGKLRALLPEKRRKDAVL
AVEYVMTASPEWFAQATPEQEKAFFQRSLQWLVDKYGADRIVTASIHRDEATPHLSAFVVPLTQDKRLSA
KEFIGSRDKMRADQTSYAGCVADLGLERGIEGSKATHQTIQQHYAAVQRGVVPTATISPQSIEPRVLEKA
GFMAKTMLGRGDLVESPEMIAERLTKAVNEGFAGAIATASTALQERRRAKEMQDTANDLRKRLDTFQGAF
KGLTKDQVTQVLRVAMTFQQENAKAKGINREKVRNTPDRGLSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-184)


  Protein structure



No available structure.




Host bacterium

ID   16913 GenBank   NZ_CP129921
Plasmid name   pPFS Incompatibility group   -
Plasmid size   4399 bp Coordinate of oriT [Strand]   1319..1353 [-]
Host baterium   Pseudomonas fragi strain EH-H1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -