Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116402
Name   oriT_pL21-1NR in_silico
Organism   Leclercia adecarboxylata strain L21
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MN423365 (77192..77276 [-], 85 nt)
oriT length   85 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 85 nt

>oriT_pL21-1NR
GGGTGTCGGGGCGGAGCCCTGACCAGGTGGTGTTTGTAATATCGTGCGTGCGCGGTATTACAAACACACATCCTGTCCCGTCTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10481 GenBank   WP_191249247
Name   Relaxase_IFA30_RS00365_pL21-1NR insolico UniProt ID   _
Length   900 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 900 a.a.        Molecular weight: 102871.99 Da        Isoelectric Point: 8.6844

>WP_191249247.1 relaxase/mobilization nuclease domain-containing protein [Leclercia adecarboxylata]
MIPVIPKKRKDGKSSFGDLVSYVSVRDEPQDDDLMEAVRASGTKADMPHSSRFSRLVDYATKLRDESFIS
LVDVMPDGGEWVNFYGVTCFHNCSSIESAAEEMEFTARKAKFARSKSDPVFHFILSWQSHESPRPEQIYD
SVRHSLSRLGLSGHQFVSAVHTDTDNLHVHVAVNRVHPETGYLNWLSYSQEKLSKACRELELKHGFSPDN
GCYVLAQDNRIVRRTSVERDRQSAWLHGRKPSLKEYIADTAVAGLREAPVTDWPSLHQRFAKAGLFIASD
NGELKVKDGWDRKRPGVTLSAFGYSWSTDKLICKLGEFTPPAQDIFTQVPNVGRYDPDTVTMLSRPGRMT
ETETLNEYAVSRLRAPLIALYQDPAQRTMQAVHTLLAHSGLYLKEQHDCLVICDGYDQTRTPVRAERVWP
ALTKAVMNSYEGGWQPVPHDIFRQVPPAERFAGGGLKARPVSDREWAKLRTGSGPQGALKREIFSDKESL
WSYAVSHCRQDLEALISSGKFTWERGHELLARQGLLLMREKQGLVVMDAYNHDQTPVKASHVHPDLTLVR
AEPHAGAFVRVPSDIFERVAPVSRYNPELAVSDRDIPGMKRDPELRRQRREARAAARDDLKARYSAWRAN
WQRPDLHNRERWQAIHDECRMRKARIRTQQRDPLVRKLHYHIAELQRMQALIALKESVKAERLELIGQGK
WYPPSYRQWVEVEALKGDRAAISQLRGWDYRDRRHDNTQSTSNQRCVVLCEPGSAPLYYNMPGLKPALQK
NGSIRFSDTDTGQHVCTDYGDRVVFRNGSDFASLQRELNRVSPVLFARDPKMGFAPEGNDIQFNQALAEM
VGWYNVYRAGEEDQVRISRPDVDRMREQCEAFFRNAEAEQNTSAYISHEPRNDWKPPSPR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(51-312)


  Protein structure



No available structure.




Host bacterium

ID   16835 GenBank   NZ_MN423365
Plasmid name   pL21-1NR Incompatibility group   IncFIB
Plasmid size   130867 bp Coordinate of oriT [Strand]   77192..77276 [-]
Host baterium   Leclercia adecarboxylata strain L21

Cargo genes

Drug resistance gene   -
Virulence gene   ugd
Metal resistance gene   pcoA, silP, silA, silB, silF, silC, silR, silS, silE, arsC, arsR, arsD, arsA, arsB
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -