Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116389
• Name: oriT_GD01|p2GD01
• Organism: Staphylococcus warneri strain GD01
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP038244 (1914..2033 [+], 120 nt)
• oriT length: 120 nt
• IRs (inverted repeats): 52..59, 61..68 (TTGGGGAT..ATCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 120 nt

>oriT_GD01|p2GD01
AGTGGCTAGCAATTATCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATAATCCCCAACAAGCTGGCGTCGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_EOJ31_RS12305_GD01|p2GD01

• ID: 10472
• GenBank: WP_189723640
• Name: Relaxase_EOJ31_RS12305_GD01|p2GD01
• UniProt ID: _
• Length: 336 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 336 a.a.
• Molecular weight: 38485.22 Da
• Isoelectric Point: 6.6953

>WP_189723640.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus warneri]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLTPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKQALRNVRDFNDEVCIEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGIELERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRRKQQERDSDTEFQPKRPTSNRDEATERDTGVTQSD
WDQFAQDTNELERSRQAAESARLAHEKARRDREERERAKQASRTIINDHRDHGLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 16822
• GenBank: NZ_CP038244
• Plasmid name: GD01|p2GD01
• Incompatibility group: -
• Plasmid size: 8656 bp
• Coordinate of oriT [Strand]: 1914..2033 [+]
• Host baterium: Staphylococcus warneri strain GD01

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -