Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116377
Name   oriT_pSC262 in_silico
Organism   Streptococcus suis strain SC262
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP061278 (4571..4608 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..6, 10..15  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pSC262
CTTTACGAAGTAAAGTATAGTGGGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10466 GenBank   WP_188318407
Name   Rep_trans_ICI52_RS00020_pSC262 insolico UniProt ID   _
Length   352 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 352 a.a.        Molecular weight: 41304.53 Da        Isoelectric Point: 5.9821

>WP_188318407.1 replication initiation factor domain-containing protein [Streptococcus suis]
MKSNEIQVLEPLKKREKGDRGLLINEWEKLTAPSNRRLTHQNLRFLFSLSWSIDRITIVGNLKEFEFDHT
FVTEDGEIFYRAGEKFTLNQAMPLLASEEAAERAGNGWRLLDKYGENIAYVETLPFKDPTTGKEKGRIDF
NPNKIETFLKTDLKSFISMMFDNPHFSRADVACDILDLPDDYVSQYRLVDAVSFRPYYGQNGALETAYWG
ARSSERQVRMYNKKLEQEKHRQIVPEEVQSWWRLELQLRRAKADEWSGVVNETLDSFYSPFYFPSDISFR
EKAILRGLHADHSLWSEASDNTKRKYRKLSKRIAKEDELTQHLKSSFSENIDTLKRELETWLGAMKVNEE
EE

  Protein domains


Predicted by InterproScan.

Replication initiation factor (Rep_trans)

(205-254)


  Protein structure



No available structure.




Host bacterium

ID   16810 GenBank   NZ_CP061278
Plasmid name   pSC262 Incompatibility group   -
Plasmid size   5125 bp Coordinate of oriT [Strand]   4571..4608 [-]
Host baterium   Streptococcus suis strain SC262

Cargo genes

Drug resistance gene   erm(T)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -