Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116375
Name   oriT_MSJK0048|unnamed2 in_silico
Organism   Lactiplantibacillus plantarum strain MSJK0048
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP136672 (1912..1931 [-], 20 nt)
oriT length   20 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 20 nt

>oriT_MSJK0048|unnamed2
GTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10464 GenBank   WP_085762593
Name   mobQ_RI097_RS15930_MSJK0048|unnamed2 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80515.14 Da        Isoelectric Point: 9.3422

>WP_085762593.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPKNAPAWSSDREQLWN
EVERKDRRANSRYAKEFNVALPVELIEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
ERISEKSFTEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLTRQLLAFTKRPYVGWQLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKANPTIKNSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPEY
YLKTAFSDAIMAALYARDEDYQRQRQAQGLKEAEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   16808 GenBank   NZ_CP136672
Plasmid name   MSJK0048|unnamed2 Incompatibility group   -
Plasmid size   52293 bp Coordinate of oriT [Strand]   1912..1931 [-]
Host baterium   Lactiplantibacillus plantarum strain MSJK0048

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -