Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116374 |
| Name | oriT_CI.11.F.A3|unnamed3  |
| Organism | Sulfitobacter dubius strain CI.11.F.A3 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP136700 (12333..12352 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_CI.11.F.A3|unnamed3
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10463 | GenBank | WP_317406882 |
| Name | mobQ_R1T39_RS18685_CI.11.F.A3|unnamed3 |
UniProt ID | _ |
| Length | 429 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 429 a.a. Molecular weight: 48592.70 Da Isoelectric Point: 6.7941
>WP_317406882.1 MULTISPECIES: MobQ family relaxase [Alphaproteobacteria]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWASDRSRLW
NEVEASETRRNSVTAREWELALPSEISAEDRSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERVGEVERVDHRSLEKQREAALDRGD
KLSAEELDRDAELKLGPAANSMERRAKAVAERQGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGAERDAGQGRVSAGLAALRAATAKDRSSERNPEDFRERLSQVVGRSRDQDDAPKPEGRNYARKRLKEIM
EKDAGRDGQSAVHKLDGHSEYDLGEDTSREARKPSVNERLKDVLNKPREKLEIEDERDQEKDQEVEKDRE
IDRDPGLSH
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWASDRSRLW
NEVEASETRRNSVTAREWELALPSEISAEDRSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERVGEVERVDHRSLEKQREAALDRGD
KLSAEELDRDAELKLGPAANSMERRAKAVAERQGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGAERDAGQGRVSAGLAALRAATAKDRSSERNPEDFRERLSQVVGRSRDQDDAPKPEGRNYARKRLKEIM
EKDAGRDGQSAVHKLDGHSEYDLGEDTSREARKPSVNERLKDVLNKPREKLEIEDERDQEKDQEVEKDRE
IDRDPGLSH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 12214 | GenBank | WP_317406886 |
| Name | t4cp2_R1T39_RS18695_CI.11.F.A3|unnamed3 |
UniProt ID | _ |
| Length | 557 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 557 a.a. Molecular weight: 61142.26 Da Isoelectric Point: 6.7754
>WP_317406886.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Alphaproteobacteria]
MRGVMLILGGLFRFFGRLIFTPILLGWMIGAVLFGAMIGALVATPFVFAFFDQPPGESAWQWLVFGPLML
IGAVFGFQYWRMASGADAFFGLTGDSHGSARFANRKELKKLQREDGLLIGRNPHTGRLLRYDGPAHLITL
APTRAGKGVGTVIPNLLATERSVLVIDPKGENARIAGEARRRFGTVHVLDPFEVSGMSSAAYNPLDRLAP
DSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDPNRRTLATVREYLTLPPEKLR
ALLELMQDSDAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIARCLARSDFAFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEASVRPLSGPADAQGGTQRLKTPTLFLLDEFAALGRLE
AVERAMGLMAGYGLQLWPILQDMSQLKDLYGERAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQ
TDSFKPGDGPSFSNNITGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYYADPEFKGLFVPQDQ
MRGVMLILGGLFRFFGRLIFTPILLGWMIGAVLFGAMIGALVATPFVFAFFDQPPGESAWQWLVFGPLML
IGAVFGFQYWRMASGADAFFGLTGDSHGSARFANRKELKKLQREDGLLIGRNPHTGRLLRYDGPAHLITL
APTRAGKGVGTVIPNLLATERSVLVIDPKGENARIAGEARRRFGTVHVLDPFEVSGMSSAAYNPLDRLAP
DSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDPNRRTLATVREYLTLPPEKLR
ALLELMQDSDAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIARCLARSDFAFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEASVRPLSGPADAQGGTQRLKTPTLFLLDEFAALGRLE
AVERAMGLMAGYGLQLWPILQDMSQLKDLYGERAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQ
TDSFKPGDGPSFSNNITGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYYADPEFKGLFVPQDQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 16807 | GenBank | NZ_CP136700 |
| Plasmid name | CI.11.F.A3|unnamed3 | Incompatibility group | - |
| Plasmid size | 15137 bp | Coordinate of oriT [Strand] | 12333..12352 [+] |
| Host baterium | Sulfitobacter dubius strain CI.11.F.A3 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |