Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116342 |
| Name | oriT_pTAA-4-1  |
| Organism | Muribaculum gordoncarteri strain TLL-A4 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP039394 (794..863 [-], 70 nt) |
| oriT length | 70 nt |
| IRs (inverted repeats) | 45..51, 64..70 (AAATTCC..GGAATTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 70 nt
>oriT_pTAA-4-1
TATTGGGGACATTTTCAGCGTATCGGAACGATATGCGGCTCGGAAAATTCCCTAATATGCTAAGGAATTT
TATTGGGGACATTTTCAGCGTATCGGAACGATATGCGGCTCGGAAAATTCCCTAATATGCTAAGGAATTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10444 | GenBank | WP_136410605 |
| Name | mobV_E7746_RS14425_pTAA-4-1 |
UniProt ID | _ |
| Length | 541 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 541 a.a. Molecular weight: 61886.82 Da Isoelectric Point: 9.3255
>WP_136410605.1 MobV family relaxase [Muribaculum gordoncarteri]
MSYAVLHIIKANSSLNSIAKHIERTAHPENADLARTHLNRYNLVEYPDGITGLAAAVEHRISNAGITRKI
SDRQVRCLNLVMTSDNEGMQKIIDSGKLDEWIADNIKWARDTFGGDNVVGAALHMDERTPHLHIAVVPIV
TAERKKKAREATAKKRYRTKAANRPRLCADDIMERGKMSRYQDIYAEAMAKYGLERGIRGSEARHIGQHE
YYRDCMVKKKGLEEDIGNLSIEKRKLDKEKKSLESKVESLECRTTALDTRKKMLTQVNEEIRQQNNELYS
ENTRLTEANSSLAAENKSLADTNAGLSEESVRLAEQRKGLAEDTDRLTAEKKAYEAQTDEARKEARNAIR
ERDEAKAERDAQRKELGSNIANIFTGSKTKRLEAEIVRKDNEISEMKDRAEARERDLHREISNLSDSLRR
QKEHEADTVRSYEWKIGNFVKFFPDAVAMLPAIEECQDVGLNDNSIKGLLSMNEYVLKSGTTLYYPFQRR
EVDASGAKVQIKRDPTDNKFHLHVNGTRIFQWLKDQWQRLTQTIKRGFGIR
MSYAVLHIIKANSSLNSIAKHIERTAHPENADLARTHLNRYNLVEYPDGITGLAAAVEHRISNAGITRKI
SDRQVRCLNLVMTSDNEGMQKIIDSGKLDEWIADNIKWARDTFGGDNVVGAALHMDERTPHLHIAVVPIV
TAERKKKAREATAKKRYRTKAANRPRLCADDIMERGKMSRYQDIYAEAMAKYGLERGIRGSEARHIGQHE
YYRDCMVKKKGLEEDIGNLSIEKRKLDKEKKSLESKVESLECRTTALDTRKKMLTQVNEEIRQQNNELYS
ENTRLTEANSSLAAENKSLADTNAGLSEESVRLAEQRKGLAEDTDRLTAEKKAYEAQTDEARKEARNAIR
ERDEAKAERDAQRKELGSNIANIFTGSKTKRLEAEIVRKDNEISEMKDRAEARERDLHREISNLSDSLRR
QKEHEADTVRSYEWKIGNFVKFFPDAVAMLPAIEECQDVGLNDNSIKGLLSMNEYVLKSGTTLYYPFQRR
EVDASGAKVQIKRDPTDNKFHLHVNGTRIFQWLKDQWQRLTQTIKRGFGIR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 16775 | GenBank | NZ_CP039394 |
| Plasmid name | pTAA-4-1 | Incompatibility group | - |
| Plasmid size | 95236 bp | Coordinate of oriT [Strand] | 794..863 [-] |
| Host baterium | Muribaculum gordoncarteri strain TLL-A4 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |