Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116341
Name   oriT_H184|unnamed in_silico
Organism   Butyricimonas faecalis strain H184
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP032820 (47800..47960 [-], 161 nt)
oriT length   161 nt
IRs (inverted repeats)      55..61, 64..70  (CAATGGC..GCCATTG)
 16..21, 35..40  (AACTAC..GTAGTT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 161 nt

>oriT_H184|unnamed
CTCGGGAGAGCCCACAACTACGTAAGCGAAGCGTGTAGTTATAGTGGGCTATATCAATGGCAAGCCATTGTCCGTACACTACAACCTTCGGTTTCCGCTCTCCTCCGTTAAGGAGGGGTTCCGTCACCGCTGCCGATTGAGGATGCACCGACCAGCACAAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10443 GenBank   WP_007559083
Name   Relaxase_D8S85_RS21175_H184|unnamed insolico UniProt ID   A0A3L7ZJB6
Length   520 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 520 a.a.        Molecular weight: 60001.99 Da        Isoelectric Point: 9.4388

>WP_007559083.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Bacteria]
MVVVVLKAATSFAGIDYNERKNEEGKSELLVAENFAMNPDNLKKSDYIAYMESVCRTNPAVKAKQFHAVI
SCKGREYSAEDLKNVALQYINKMGYGNNPYMIYFHSDTENNHVHIVSTRVQKNGQKVKDNMEAVRSQKVI
NQIMNVDLALKAKDDISKYMEFSFSTVQQYKLLLEQSGWKLREKDGLLILYKGGEKHASIQLEQIKDKAK
QYTPDEERRKQITALLFKYKQGLSYTELQTLMKDKFGINLVFHTGKGHTKPYGYTLIDYRNKRVLKGGEV
MDLKELLVEPNKQAKVEHCNSIINLLLKDGTKYTMDSFKKLMLDYGYRFSMNGTIFINGDDKALLVLDKK
LLKELRYNSRVYEANKFNVATLKEAELLSRIYHVKKDDILIQEHMDKKNTVYTDMINSYLAHSSDLHSTL
REKGILFVEDDNLVYLIDKKNKVIVSTDDLGINIIKDGYSKDRITLVTLDKMERINVEQDSELARGFNLI
DAICDILSQHINVQQDKSPNRKKKRGQQQN

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(15-143)


  Protein structure


Source ID Structure
AlphaFold DB A0A3L7ZJB6


T4CP

ID   12195 GenBank   WP_004295345
Name   t4cp2_D8S85_RS21150_H184|unnamed insolico UniProt ID   _
Length   651 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 651 a.a.        Molecular weight: 74504.94 Da        Isoelectric Point: 8.6510

>WP_004295345.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Bacteria]
MEESKELQKLYGFMQAFIYITVCIEILLFVHFPFSEQIMPLLSKMAKIPIYSNILYSKLFTFFIIMVTCI
GTRSKKDLELDPTKQIIFPLIFGFIMFFGSICFLFFKEKGETSLEWYNIAYIILSIIGATLINSALDNIS
KRIKSNFMKDRFNIENESFEQSKDKVETEFSVNIPMKFFYNRKWHNGWLNICNCFRGTFVIGTPGSGKSF
SVINSFIRQHSAKGFAEVVYDFKFPELAKIAYYNYQKNKQLGKIPSNFKFNVINFSDIEYSRRINPLKRE
YIEILADATETAEALYESLQKGDKGSGGNSDFFKTSAVNLLAASIYFWSRYENGKYSDLPHVLAFLNQEY
DVLFKVLFSEPELKSLVSPFEAAYKSGAVDQLEGQMASLKVQLSRLATKESFWVFSGNDFNLKVSDKKDP
SYLIIANNPKTQSMNSALNALIINRLTRLVNTKGNYPTSIIVDECPTLYFYQLATLLSTARSNKVSICLG
LQELPQLEEQYGKATAKTITSIIGNTLSGQAKAPETLDWLQKLFGKVKQVKEGVTIRRNETTINMNEQMD
FVIPASKISSLQAGTLVGQVALDFGQEDNFPTAMYHCKTNLDLKKIKKEEEAYKELPKVYNFGTADNREK
LLQKNFKRIYDEVETVIEQYV

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(153-557)

YWFCY protein (YWFCY)

(3-143)

  Protein structure



No available structure.




Host bacterium

ID   16774 GenBank   NZ_CP032820
Plasmid name   H184|unnamed Incompatibility group   -
Plasmid size   51017 bp Coordinate of oriT [Strand]   47800..47960 [-]
Host baterium   Butyricimonas faecalis strain H184

Cargo genes

Drug resistance gene   cfxA
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -