Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116320
• Name: oriT_IVB6235|unnamed2
• Organism: Staphylococcus arlettae strain IVB6235
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP094805 (7810..7904 [-], 95 nt)
• oriT length: 95 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 95 nt

>oriT_IVB6235|unnamed2
TCGGCTGAAACTTTGAATATGAGTGTGCCTTCGTTTGTTAAAAACAAGGCACAAGGAGCTCGATTAGTGGCGCCCAAATTAGACAAAGTCACGCG

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_MUA37_RS13210_IVB6235|unnamed2

• ID: 10427
• GenBank: WP_262624969
• Name: Relaxase_MUA37_RS13210_IVB6235|unnamed2
• UniProt ID: _
• Length: 293 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 293 a.a.
• Molecular weight: 33329.19 Da
• Isoelectric Point: 9.1815

>WP_262624969.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus arlettae]
MATTKISSTKSTSRAINYAEKRAEEKSGLNCDVDYAKSAFKASREVYGKTDGNQGHVIIQSFKPGEVTPE
QCNALGLELAEKMAPDHQVAIYTHSDTDHIHNHIVINAVNLETGKKFNNNKQALKDVRQANDDVCRKHNL
SIPNNQAEIRYTQAEQNIIDKGKSSWKNEIRLAIDEIQATNMDSFKEQLRPKGITVERVTDKTITYRHIE
ADKKVRGSKLGNNYDKGGIMDGFESEKQRRRIQYESERTAPERTERAEREAREQDDRARAARAKQIEPEP
KVSKRTKGFDLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-234)

Protein structure

No available structure.

Host bacterium

• ID: 16753
• GenBank: NZ_CP094805
• Plasmid name: IVB6235|unnamed2
• Incompatibility group: -
• Plasmid size: 28347 bp
• Coordinate of oriT [Strand]: 7810..7904 [-]
• Host baterium: Staphylococcus arlettae strain IVB6235

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: AcrIIA21