Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116319
• Name: oriT_IVB6235|unnamed1
• Organism: Staphylococcus arlettae strain IVB6235
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP094804 (8849..8946 [+], 98 nt)
• oriT length: 98 nt
• IRs (inverted repeats): _
• Location of nic site: 66..67
• Conserved sequence flanking the nic site: GATTGGTCGC
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 98 nt

>oriT_IVB6235|unnamed1
TCTGCTGAAACTTTAAATATGAGTGTGCCTTCGTTTGTTAAAAACAAGGCACACGGTACACGATTGGTCGCACCCAAATTTGATAAAGAGACGCGACA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_MUA37_RS13060_IVB6235|unnamed1

• ID: 10426
• GenBank: WP_316965049
• Name: Relaxase_MUA37_RS13060_IVB6235|unnamed1
• UniProt ID: _
• Length: 326 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 326 a.a.
• Molecular weight: 37135.18 Da
• Isoelectric Point: 8.2657

>WP_316965049.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus arlettae]
MATAKISSTKSTSRAINYAEKRAEEKSGLNCDVDYAKSAFKASRELYGKTDGNQGYVIIQSFKPGEVTPE
QCNALGLELAEKIAPDHQIAIYTHSDTDHIHNHIVMNAVNLETGKKFNNNKQALRDIRKANDEICLDHGL
SIPEPTSELRYTQAEQNLIDKGKSSWKNDIRLAIDATQATDMESFQEQLYAKGITVERVTDKTITYRHME
ADKKVRGSKLGDIYDKGGITDGFEAEKQRRRSAHESEQPNLERTPKDQSTHQQTRTKLNWEQFEHATEAQ
RKRRERAERAEREAREQNDRARAARAKQVERESNISQRTKGFDLGL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-234)

Protein structure

No available structure.

Host bacterium

• ID: 16752
• GenBank: NZ_CP094804
• Plasmid name: IVB6235|unnamed1
• Incompatibility group: -
• Plasmid size: 29289 bp
• Coordinate of oriT [Strand]: 8849..8946 [+]
• Host baterium: Staphylococcus arlettae strain IVB6235

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: AcrIIA21