Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116308 |
| Name | oriT_IVB6232|unnamed2  |
| Organism | Staphylococcus aureus strain IVB6232 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP094761 (22061..22247 [+], 187 nt) |
| oriT length | 187 nt |
| IRs (inverted repeats) | 101..106, 110..115 (TCTGGC..GCCAGA) 58..65, 72..79 (TTTTTATG..CATAAAAA) 41..46, 48..53 (AAGTGT..ACACTT) 31..39, 44..52 (AGTGTCACA..TGTGACACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 187 nt
>oriT_IVB6232|unnamed2
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTTAAGCTTTTTATGACCCCACATAAAAATATTGTTGAAGCTTTGAATTGTCTGGCTTTGCCAGATACCCCATGTATACATGGGGTCAAATTTCCCTTATGCTCTTACGGAGTTCTTAGAGGAAAAATAAAAATTCT
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTTAAGCTTTTTATGACCCCACATAAAAATATTGTTGAAGCTTTGAATTGTCTGGCTTTGCCAGATACCCCATGTATACATGGGGTCAAATTTCCCTTATGCTCTTACGGAGTTCTTAGAGGAAAAATAAAAATTCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 16741 | GenBank | NZ_CP094761 |
| Plasmid name | IVB6232|unnamed2 | Incompatibility group | - |
| Plasmid size | 25701 bp | Coordinate of oriT [Strand] | 22061..22247 [+] |
| Host baterium | Staphylococcus aureus strain IVB6232 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |