Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116263 |
| Name | oriT_ESA302|p4  |
| Organism | Escherichia albertii strain ESA302 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP136262 (25053..25405 [-], 353 nt) |
| oriT length | 353 nt |
| IRs (inverted repeats) | 256..263, 272..279 (ACCGCTAG..CTAGCGGT) 194..199, 207..212 (ATAAAA..TTTTAT) 40..47, 50..57 (GCAAAAAC..GTTTTTGC) 4..11, 16..23 (TTGGTGGT..ACCACCAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 353 nt
>oriT_ESA302|p4
AGGTTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGTGTTATGAAAAATTAGTTTCTCTTACTCTCTTTATGATATTTAAAAAAGCGGTGTCGGCGCGGCTACAACAACGCGCCGACACCGCTTTGTAGGGGGGGGGACTGACTATTTTTATAAAAAACATTATTTTATGTTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTATAGGATACCGCTAGGGGCGCTGCTAGCGGTGCGTCCCTGTTTGCATTATGAATTTTAGTGTTTCGAAATTAACTTTATTTTATGTTCAAAAAAGGTAATCTCTA
AGGTTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGTGTTATGAAAAATTAGTTTCTCTTACTCTCTTTATGATATTTAAAAAAGCGGTGTCGGCGCGGCTACAACAACGCGCCGACACCGCTTTGTAGGGGGGGGGACTGACTATTTTTATAAAAAACATTATTTTATGTTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTATAGGATACCGCTAGGGGCGCTGCTAGCGGTGCGTCCCTGTTTGCATTATGAATTTTAGTGTTTCGAAATTAACTTTATTTTATGTTCAAAAAAGGTAATCTCTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 16696 | GenBank | NZ_CP136262 |
| Plasmid name | ESA302|p4 | Incompatibility group | IncFIB |
| Plasmid size | 51081 bp | Coordinate of oriT [Strand] | 25053..25405 [-] |
| Host baterium | Escherichia albertii strain ESA302 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | espL2 |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |