Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116246
Name   oriT_PAMC 29434|unnamed7 in_silico
Organism   Bacillus mycoides strain PAMC 29434
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP136379 (3720..3758 [-], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_PAMC 29434|unnamed7
CTTTACGATAGTAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10393 GenBank   WP_316283050
Name   mobV_RVY74_RS32245_PAMC 29434|unnamed7 insolico UniProt ID   _
Length   411 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 411 a.a.        Molecular weight: 48485.44 Da        Isoelectric Point: 9.5721

>WP_316283050.1 MobV family relaxase [Bacillus mycoides]
MSYAICRMQKFKMRDVKGIQIHNQREKESHTNHDIESDRTQLNYDLHNDGHIDYLKTVKDKIEQNVETNR
AIRKDAVVMCEFVVTSDREFFDVLDIVDPAQQKVFFKEAYSFLKDRYGEQNIVHAAVHLDEKTPHMHVGM
VPVTGENKLSAKQIFNRKELVSLQDDFHAHMVEKGFYLERGVSSDKKHVEMRKLKAMTAKEEIKALEKEM
GQCLQKKEVVNKQMEQLESRLNQLQNAVKLTNKVDKIEVKHKGGILRSKSVEMSVEDFEELKTKAKASEA
FKRENMTLHRKNEALQASNTDLHTTVKRLEKENEELKPYKGKFERLAKLIDEMDKFYEKFIPKEMPKFHE
IIGFCKRKVNASMNRFSSLRYSEERLNEHEKRGYETASKFLENQRKEQKQQRKERGNERGL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-195)


  Protein structure



No available structure.




Host bacterium

ID   16679 GenBank   NZ_CP136379
Plasmid name   PAMC 29434|unnamed7 Incompatibility group   -
Plasmid size   4928 bp Coordinate of oriT [Strand]   3720..3758 [-]
Host baterium   Bacillus mycoides strain PAMC 29434

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -