Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116204
Name   oriT_pLV1 in_silico
Organism   Limosilactobacillus portuensis strain LV1276_C155
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP117297 (4279..4299 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pLV1
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10363 GenBank   WP_273646480
Name   mobQ_PRK60_RS09720_pLV1 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80300.70 Da        Isoelectric Point: 8.9385

>WP_273646480.1 MobQ family relaxase [Limosilactobacillus portuensis]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDQEGRHYFYARSVMPESFILTPKNAPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDQGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKMYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
DRISEKSFENQGIDEIPTQHEGINSKRHERRKFNQQVSAQRSAQAKYHNLDEKIRNHEHFDALTDELSFS
EKHTISHLSQQLKAYVDLEHLDDKQRMLFNWKNSLLIKHAVGEDVTKQLLTIDQQTTSLAQANQLLNKVV
ERVTKQLYPELNFKQTTAAERRELIKETNSEQTIFKGSELAERLADIRSDLLTQQLLTFTKRPYTSWQLV
NQQAQTIEKQLTTVLAKHGHQLDDLRHTDRGMLAAYQPNELEFISKAVKNLRVMREVKAVVQTQYNSILT
TAFPDSDLDKLETIDKEQIYTAVVYYDPELKPLSADDLRQLQQQPPVVFTSQQHQAGLNYLLGKMELKDI
QDHRLQRVLKHDGTRQLFIGECGQDPKLDHQQIEMVQTRLKQQTMRFDQYKQAQVKDYQAINYYPTSPKN
YLTNILDEALMTILYAKNTDYLRKQQLRGLKETEWAMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(277-384)


  Protein structure



No available structure.




Host bacterium

ID   16637 GenBank   NZ_CP117297
Plasmid name   pLV1 Incompatibility group   -
Plasmid size   62042 bp Coordinate of oriT [Strand]   4279..4299 [-]
Host baterium   Limosilactobacillus portuensis strain LV1276_C155

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21