Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116203
• Name: oriT_SRCM101167|unnamed4
• Organism: Lactiplantibacillus plantarum strain SRCM101167
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP028338 (17321..17348 [-], 28 nt)
• oriT length: 28 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 28 nt

>oriT_SRCM101167|unnamed4
AATTTTTAGTGGAGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_C7M36_RS16260_SRCM101167|unnamed4

• ID: 10362
• GenBank: WP_068226441
• Name: Relaxase_C7M36_RS16260_SRCM101167|unnamed4
• UniProt ID: A0A2R3JSM0
• Length: 389 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 389 a.a.
• Molecular weight: 44209.01 Da
• Isoelectric Point: 10.0373

>WP_068226441.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactobacillaceae]
MATTHIKRSTSASRLVNYAEKRAIKKDGLNLDIQYAKSEFKQVRAVYGNPGKTQAYASRIAFSPLEFNPQ
DPHDQTTVLAVAKEVYAKAYPNQQVALYEHADTDSLHVHAVIGAINLETGQKMHGNWHQYRDHLVHITDQ
VCQEHGLMVTRPDPNRHEKRSMAEIKLRAKQQPTWKDQIRQAVDHTMQNPLIRDFQAFQDDLKQQAVKVW
ERGKNLTYQLLGTNYKSRGTKLGLDYEKETIFNELASRQNQTRTNQQPERTVNPTIDPAQSDHSRTPELP
GHSDSTASHSQNVPRSTTSSDRTDRPTSQPTVSDDLKQLRQQQRQLAGPIKTDLTKRLRSIPKADQPDQS
GKSDRAQTNSNRTSQKQPAPQPTQRPSEPDHSRDDGPSR

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-246)

Protein structure

• AlphaFold DB: A0A2R3JSM0

Host bacterium

• ID: 16636
• GenBank: NZ_CP028338
• Plasmid name: SRCM101167|unnamed4
• Incompatibility group: -
• Plasmid size: 26244 bp
• Coordinate of oriT [Strand]: 17321..17348 [-]
• Host baterium: Lactiplantibacillus plantarum strain SRCM101167

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -