Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116201
Name   oriT_X7022|unnamed2 in_silico
Organism   Lactiplantibacillus plantarum strain X7022
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP048923 (34737..34757 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_X7022|unnamed2
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10360 GenBank   WP_163627751
Name   mobQ_G3O10_RS15070_X7022|unnamed2 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80416.26 Da        Isoelectric Point: 9.5150

>WP_163627751.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSIMPESFILTPKNSPEWASDREQLWN
EVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDQGMVADVAIHRDHQDNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKMYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLTRQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKANPTIKNSQIEKIQKQLKGQQAKDDQYRKENIGHYQPLNYKPVSPDY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   16634 GenBank   NZ_CP048923
Plasmid name   X7022|unnamed2 Incompatibility group   -
Plasmid size   38326 bp Coordinate of oriT [Strand]   34737..34757 [+]
Host baterium   Lactiplantibacillus plantarum strain X7022

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21