Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116199
Name   oriT_SRCM100995|unnamed4 in_silico
Organism   Lactiplantibacillus plantarum strain SRCM100995
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP028279 (35338..35358 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_SRCM100995|unnamed4
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10358 GenBank   WP_160248129
Name   mobQ_C7M34_RS16135_SRCM100995|unnamed4 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80412.07 Da        Isoelectric Point: 9.4536

>WP_160248129.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSIMPESFILTPKNSPEWASDREQLWN
EVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKITEWRHNWAASVNQALEQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRLLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLTRQLLTFTKRPYVGWKLL
MQQEKEVKIKLKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIKTQYHEVLK
RAFPKGDLDELPMTKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKENIGHYQPLNYKPVSPDY
YLKTAFSDAIMTVLYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   16632 GenBank   NZ_CP028279
Plasmid name   SRCM100995|unnamed4 Incompatibility group   -
Plasmid size   48008 bp Coordinate of oriT [Strand]   35338..35358 [+]
Host baterium   Lactiplantibacillus plantarum strain SRCM100995

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -