Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116190
Name   oriT_Heal19|unnamed2 in_silico
Organism   Lactiplantibacillus plantarum strain Heal19
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP055121 (21543..21568 [+], 26 nt)
oriT length   26 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 26 nt

>oriT_Heal19|unnamed2
ATTTTAGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10354 GenBank   WP_176044835
Name   mobQ_Heal19_RS00085_Heal19|unnamed2 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80656.99 Da        Isoelectric Point: 7.8717

>WP_176044835.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDNKEGRSYFYGRSIMPETFILSPKNAPEWTNDRQRLWN
EVEKKDRKANSRYAKEFNVALPVELSADEQKELLIKYVQENFVDEGMVADMAIHRDHPDNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQRSIP
DRISEKSFEDQGINEVPTQHEGINSKRYERKAFNQQVEEQRKSQAKYHNLDQKIRNHEHFDALTDELSFS
EKHTIRDLSQQLKTYVDLEHLDDKERMLFNWKNSLLIKHAIGEDVTQKLLTIDQQSMSLEQANQLLNKVV
DQATKKLYPTVDFEQTTLAQRRELIKETNSEQTIFKDSELTERLADIRNDLLTQQLLTFTKRPYTSWQLV
NQQAQTIEKQLTAVLAKHGHQLDDLKHTDRGMLADYKPNELEFISKAVKDLRVIREVKDVVQTQYNSILM
TAFPDSDLDKLDTIDKEQIYTAVVYYDPELKPLSVDDLRQLQHQPPMVFTNQQHQAGLNYLLGKIELQDV
KDHRLQRVLKHDGTRQLFLGECGQDSKLNHKQIEAVQTRLKHQATRFDQYKQEQVKHYQAINYHQTSPKN
YLTNILDEALITILYAKNTDYLRKQQLKGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(277-384)


  Protein structure



No available structure.




Host bacterium

ID   16623 GenBank   NZ_CP055121
Plasmid name   Heal19|unnamed2 Incompatibility group   -
Plasmid size   25720 bp Coordinate of oriT [Strand]   21543..21568 [+]
Host baterium   Lactiplantibacillus plantarum strain Heal19

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21