Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116189
Name   oriT_pRJ101 in_silico
Organism   Staphylococcus aureus strain 4185
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MF706324 (3698..3795 [-], 98 nt)
oriT length   98 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 98 nt

>oriT_pRJ101
TCGGCTGAAACTTTAAATATGAGTGTGCCTGCTTTCGTTAAGAAAAAGGCACAAGGCATTCGATTAGTTGCACCTAAATTAGATAAAGCAACACGACA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10353 GenBank   WP_172691940
Name   Relaxase_HTO34_RS00030_pRJ101 insolico UniProt ID   _
Length   335 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 335 a.a.        Molecular weight: 38830.74 Da        Isoelectric Point: 7.3192

>WP_172691940.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus aureus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKVSRELYGKTDGNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKFAPHHQVAVYTHNDTDHVHNHIVINSINLETGKKFNNNKQALRDLRDFNDEVCRNHGL
SVPEKDTARLRYTQTEKAIADPNIKSTAQYSWKDEIREAIDQSQATNIDELKTHLSQYGIEIERVTSKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRRQQEREAEHDYQPKRRITNRDESTERDTGVTQPDW
DRFAKDTNELERSRKAAESARFINEKARRDREARIQAERETRTIINNDRDHGYDL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-242)


  Protein structure



No available structure.




Host bacterium

ID   16622 GenBank   NZ_MF706324
Plasmid name   pRJ101 Incompatibility group   -
Plasmid size   11653 bp Coordinate of oriT [Strand]   3698..3795 [-]
Host baterium   Staphylococcus aureus strain 4185

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -