Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116173
Name   oriT_SRCM103311|unnamed3 in_silico
Organism   Lactiplantibacillus plantarum strain SRCM103311
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP035134 (8310..8330 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_SRCM103311|unnamed3
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10345 GenBank   WP_128484777
Name   mobQ_EQH94_RS16065_SRCM103311|unnamed3 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80202.83 Da        Isoelectric Point: 9.3465

>WP_128484777.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPKNAPSWASDREQLWN
EVERKDRRANSRYAKEFNVALPVELIEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKITEWRHNWAASVNQALEQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKSKAGYKNMQDKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKKLLTINQQESSLKKADELLNKVV
DRTTKKLYPGLDFEQTTQAERRELIKETESEQTIFKGSELNERLMNICDDLLTRQLLAFTKRPYVGWQLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKVNIGHYQPLNYKPVSPSY
YLKTAFSNAIMTALYARDEDYERQKQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   16606 GenBank   NZ_CP035134
Plasmid name   SRCM103311|unnamed3 Incompatibility group   -
Plasmid size   53276 bp Coordinate of oriT [Strand]   8310..8330 [-]
Host baterium   Lactiplantibacillus plantarum strain SRCM103311

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -