Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116172
Name   oriT_LMT1-48|p_1 in_silico
Organism   Lactiplantibacillus plantarum strain LMT1-48
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP033889 (1334..1354 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_LMT1-48|p_1
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10344 GenBank   WP_123808937
Name   mobQ_EGU28_RS15525_LMT1-48|p_1 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80344.07 Da        Isoelectric Point: 9.7099

>WP_123808937.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYVRSIMPESFILTPKNAPAWASDREQLWN
EVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVNEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKITEWRHNWANSVNQILAQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKTYRKSKAGYKNMQDKVVNRGHLDSLSKHFSFN
EKKVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKANELLNKVV
DRTTKKLYPELDFEQTTQAERRELIKETNSEQTIFKGSELSERLMNIRGDLLTRQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKANPTIKNSQIEKIQKQLKGQQAKDDQYRKENIGHYQPLNYKPVSPDY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKKTEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   16605 GenBank   NZ_CP033889
Plasmid name   LMT1-48|p_1 Incompatibility group   -
Plasmid size   53517 bp Coordinate of oriT [Strand]   1334..1354 [-]
Host baterium   Lactiplantibacillus plantarum strain LMT1-48

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -