Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116171
Name   oriT_pL11623-1 in_silico
Organism   Lactiplantibacillus plantarum strain TMW 1.1623
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP017380 (4871..4891 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pL11623-1
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10343 GenBank   WP_085762543
Name   mobQ_BIZ34_RS15345_pL11623-1 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80703.32 Da        Isoelectric Point: 9.1771

>WP_085762543.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPKNAPAWASDREQLWN
EVERKDRRANSRYAKEFNVALPVELIEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFDSDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
ERISEKSFTEQGIDDTPTQHEGINSKRYERKEFNQQVKNYRKAKASYKNNQEKAINRGHLDSLSEHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAIGEDVTKKLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTQAERRELIKETESEQTIFKGSELNERLMNICDDLLTRQLLVFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSSTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQKNPPRVFNTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKVDPTIKNSQIEKIQKQLKAQQAKDDQYRKANMGHYQPLNYKPVSPNY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   16604 GenBank   NZ_CP017380
Plasmid name   pL11623-1 Incompatibility group   -
Plasmid size   42745 bp Coordinate of oriT [Strand]   4871..4891 [-]
Host baterium   Lactiplantibacillus plantarum strain TMW 1.1623

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -