Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116153 |
| Name | oriT_pKAM645_11  |
| Organism | Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM645 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP026431 (1681..1865 [+], 185 nt) |
| oriT length | 185 nt |
| IRs (inverted repeats) | 105..110, 115..120 (ACCCCC..GGGGGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 185 nt
>oriT_pKAM645_11
CCACCCGGATATAACAGTAGTATAAGTTGTTGTTTCAACCCGTCTTTTTGGGTGGAACAACAAGGCATTTTATGGGTAAAGCGAAGCGAACCCGTAAAACTGCCACCCCCAACCGGGGGTCGTTGTTCGATTTTGAGCGACAGCGAAAAAATAGAACATAAGGGGGGAGGGTTTGGGTTTTACGG
CCACCCGGATATAACAGTAGTATAAGTTGTTGTTTCAACCCGTCTTTTTGGGTGGAACAACAAGGCATTTTATGGGTAAAGCGAAGCGAACCCGTAAAACTGCCACCCCCAACCGGGGGTCGTTGTTCGATTTTGAGCGACAGCGAAAAAATAGAACATAAGGGGGGAGGGTTTGGGTTTTACGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 16586 | GenBank | NZ_AP026431 |
| Plasmid name | pKAM645_11 | Incompatibility group | Col |
| Plasmid size | 2325 bp | Coordinate of oriT [Strand] | 1681..1865 [+] |
| Host baterium | Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM645 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |