Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116144 |
| Name | oriT_CACC736|p1_CACC736  |
| Organism | Lactobacillus amylovorus strain CACC736 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP104880 (35474..35508 [-], 35 nt) |
| oriT length | 35 nt |
| IRs (inverted repeats) | 5..11, 15..21 (ACTTTGC..GCAAAGT) |
| Location of nic site | 29..30 |
| Conserved sequence flanking the nic site |
GTGTGTTATA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 35 nt
>oriT_CACC736|p1_CACC736
CACGACTTTGCGAAGCAAAGTGTAGTGTGTTATAC
CACGACTTTGCGAAGCAAAGTGTAGTGTGTTATAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10325 | GenBank | WP_262274894 |
| Name | Replic_Relax_N6G93_RS10275_CACC736|p1_CACC736 |
UniProt ID | _ |
| Length | 868 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 868 a.a. Molecular weight: 99714.16 Da Isoelectric Point: 9.6482
>WP_262274894.1 hypothetical protein [Lactobacillus amylovorus]
MINFKNNFKAISLTDDQFLLIKQIANLGFVTKPQLEMIYSIIKNKPTSISNHILNKLVNKDKVLNRIKSN
ESQNRIKQIAYVISRYGRNLLSAYHCFYRDPRSFGINFHNLQANEVVIQALYASNFKPTALGSNNSSLRF
NDEEKTVSITNSFGSTFALPTFDVPFYDKKVSKPVVSRLNEDYFIKNADLARLPELLTEGLLVGGITDKK
LRLSLDSKAQSTFSSEKGNEDDDWFVQDLSFLKNPRLLRYISFFKPFLSKKFIEEMQSYQGLTKMSGLRG
AGAHVKLVNVSNFYQQLLKRSNCYYFLLNLYQQLLNITNKKQLLATVGNYWQQLATVNNNYQELVTFTNS
TLKKDTLDKNLAIIKPIGLLPFRVGSDFDDRVQRASLALRGFNYHLKLTEFDTRPFNAQLGITPTKKDNT
AFEADTMITFKRNNKVQSVFIELDNRTEGSATQAQKILNYIEYANQHPNDNILLAIVSADGSLPTNKLKQ
YTYPDQHLGVLVDKMLRIRVGEGQQTEDGRLVKATPYLIELYERCPNLKIIFAGLSEAPMRIAEFIVNAN
HNIDYISSAFVLARRISKETQWDVTFDPTIEVKEAIKNTPALVDTTYNQLHYNVSGIYGYFNYSNKQTNL
HVRQPVIAGDEYDLDTPYLVTEVTQSFGKHHVLKDRDSIPPMVIFPTRERLTHANVPPAIQKMCNWSPKF
IAGQIYYYQPRLGIDNNPYLLRELRNLVIRHSKDIYQYYSKGFLSRKELAQGITYSDTDKKLPFAYADHI
LQKTRKYNELHRLTNYMNDKAFAEQIMLNEIPLKMLKSLIARTQGQAFSIPVIADLPYSIVGDDSLIVPD
HISLLDCLTTPNTRYRRSDAKIDLKYSY
MINFKNNFKAISLTDDQFLLIKQIANLGFVTKPQLEMIYSIIKNKPTSISNHILNKLVNKDKVLNRIKSN
ESQNRIKQIAYVISRYGRNLLSAYHCFYRDPRSFGINFHNLQANEVVIQALYASNFKPTALGSNNSSLRF
NDEEKTVSITNSFGSTFALPTFDVPFYDKKVSKPVVSRLNEDYFIKNADLARLPELLTEGLLVGGITDKK
LRLSLDSKAQSTFSSEKGNEDDDWFVQDLSFLKNPRLLRYISFFKPFLSKKFIEEMQSYQGLTKMSGLRG
AGAHVKLVNVSNFYQQLLKRSNCYYFLLNLYQQLLNITNKKQLLATVGNYWQQLATVNNNYQELVTFTNS
TLKKDTLDKNLAIIKPIGLLPFRVGSDFDDRVQRASLALRGFNYHLKLTEFDTRPFNAQLGITPTKKDNT
AFEADTMITFKRNNKVQSVFIELDNRTEGSATQAQKILNYIEYANQHPNDNILLAIVSADGSLPTNKLKQ
YTYPDQHLGVLVDKMLRIRVGEGQQTEDGRLVKATPYLIELYERCPNLKIIFAGLSEAPMRIAEFIVNAN
HNIDYISSAFVLARRISKETQWDVTFDPTIEVKEAIKNTPALVDTTYNQLHYNVSGIYGYFNYSNKQTNL
HVRQPVIAGDEYDLDTPYLVTEVTQSFGKHHVLKDRDSIPPMVIFPTRERLTHANVPPAIQKMCNWSPKF
IAGQIYYYQPRLGIDNNPYLLRELRNLVIRHSKDIYQYYSKGFLSRKELAQGITYSDTDKKLPFAYADHI
LQKTRKYNELHRLTNYMNDKAFAEQIMLNEIPLKMLKSLIARTQGQAFSIPVIADLPYSIVGDDSLIVPD
HISLLDCLTTPNTRYRRSDAKIDLKYSY
Protein domains
No domain identified.
Protein structure
No available structure.
Host bacterium
| ID | 16577 | GenBank | NZ_CP104880 |
| Plasmid name | CACC736|p1_CACC736 | Incompatibility group | - |
| Plasmid size | 76480 bp | Coordinate of oriT [Strand] | 35474..35508 [-] |
| Host baterium | Lactobacillus amylovorus strain CACC736 |
Cargo genes
| Drug resistance gene | tet(W), ant(6)-Ia |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |