Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116135
Name   oriT_pSH190041-2 in_silico
Organism   Shewanella sp. NFH-SH190041
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP026072 (322..351 [+], 30 nt)
oriT length   30 nt
IRs (inverted repeats)      5..10, 14..19  (CTTTGG..CCAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 30 nt

>oriT_pSH190041-2
ACGGCTTTGGGAACCAAAGTGTAGTGAGTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10319 GenBank   WP_261925242
Name   mobV_NFHSH190041_RS19635_pSH190041-2 insolico UniProt ID   _
Length   323 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 323 a.a.        Molecular weight: 36905.43 Da        Isoelectric Point: 10.2159

>WP_261925242.1 MobV family relaxase [Shewanella sp. NFH-SH190041]
MSDFCIMRTAKLKSLGNIAGSLAHAFRERQTLNADQNRQHRNINLGGKTANEVMLKIKSMLPEKRRKDAV
LAIEYLFTASPEIMNKMTLKEQREYFKDCLKWLKTNYGEDNLVFAGIHEDETTPHCYAYVLPLDNGKLNA
KKWLGGRKKLSDMQSHFHQNVGAKFGMNRGLKGSKAKHQTVKKYYDQVNHISQVPAPEKPTNKQLLAAAT
GFNTEWLDQLLSTAKSVPSLQNQIKLASELRRTLALQQVKLDTRESEIGNIEMMKGKLIAGLKQLERDRH
QVNQKLSESDSKHAKDIHEYQKRVQALEAALNDFESRKMDFIP

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   16568 GenBank   NZ_AP026072
Plasmid name   pSH190041-2 Incompatibility group   -
Plasmid size   2872 bp Coordinate of oriT [Strand]   322..351 [+]
Host baterium   Shewanella sp. NFH-SH190041

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -