Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116132 |
| Name | oriT_pKAM471_4  |
| Organism | Aeromonas caviae strain KAM471 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP026374 (2473..2508 [-], 36 nt) |
| oriT length | 36 nt |
| IRs (inverted repeats) | 3..9, 13..19 (GTTTCTC..GAGAAAC) |
| Location of nic site | 30..31 |
| Conserved sequence flanking the nic site |
GTGCGCCCTC |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 36 nt
>oriT_pKAM471_4
CAGTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTCC
CAGTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTCC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10318 | GenBank | WP_261921580 |
| Name | MobA_MobL_OCX46_RS22175_pKAM471_4 |
UniProt ID | _ |
| Length | 126 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 126 a.a. Molecular weight: 14506.49 Da Isoelectric Point: 9.0996
>WP_261921580.1 MobA/MobL family protein [Aeromonas caviae]
MPATKTRCCTPRPSWAAGAAEVGNYWDAADLYERANGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEV
ERLPYTLAIHKGGENPHCHLMMSERKNDGVERKKDQWFSRYNPKNPGQGGRRKPRV
MPATKTRCCTPRPSWAAGAAEVGNYWDAADLYERANGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEV
ERLPYTLAIHKGGENPHCHLMMSERKNDGVERKKDQWFSRYNPKNPGQGGRRKPRV
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 16565 | GenBank | NZ_AP026374 |
| Plasmid name | pKAM471_4 | Incompatibility group | IncQ1 |
| Plasmid size | 4983 bp | Coordinate of oriT [Strand] | 2473..2508 [-] |
| Host baterium | Aeromonas caviae strain KAM471 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |