Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 116129
• Name: oriT_pLP12-5
• Organism: Lactiplantibacillus plantarum subsp. plantarum strain TS12
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP018329 (15719..15744 [+], 26 nt)
• oriT length: 26 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 26 nt

>oriT_pLP12-5
ATTTTGGTGGGGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_BSG92_RS16790_pLP12-5

• ID: 10315
• GenBank: WP_074030474
• Name: mobQ_BSG92_RS16790_pLP12-5
• UniProt ID: _
• Length: 687 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 687 a.a.
• Molecular weight: 80502.44 Da
• Isoelectric Point: 9.6617

>WP_074030474.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGQHYFYARSVMPDSFILTPKNSPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSADEQKELLIKYVQENFVDQGMVADVAIHRDHADNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAASVNHVLEQKNIP
DRISEKSFIDQGIDDTPTQHEGINSKRHERKAFNQQVKSYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAIGEDVTKQLLMINQQESSLKKADELLNKLV
DRTIKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLNRQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEKVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQENPPRVFTTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPMIKNSQSEKIQKQLKEQQAKDDQYRKANMGHYQPLNYKPVSPKY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMAKKQRQHQTRNRHEDGGMHL

Protein domains

Predicted by InterproScan.

• Nicking enzyme C-terminal middle helical domain (NES_C_h) (276-384)

• MobA/MobL family (MobA_MobL) (17-241)

Protein structure

No available structure.

Host bacterium

• ID: 16562
• GenBank: NZ_CP018329
• Plasmid name: pLP12-5
• Incompatibility group: -
• Plasmid size: 27907 bp
• Coordinate of oriT [Strand]: 15719..15744 [+]
• Host baterium: Lactiplantibacillus plantarum subsp. plantarum strain TS12

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -