Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   116128
Name   oriT_pLP12-1 in_silico
Organism   Lactiplantibacillus plantarum subsp. plantarum strain TS12
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP018325 (56836..56856 [+], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pLP12-1
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10314 GenBank   WP_074030323
Name   mobQ_BSG92_RS15865_pLP12-1 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80310.80 Da        Isoelectric Point: 9.3399

>WP_074030323.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSIMPESFILTPENAPAWASNREQLWN
EVEKNDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKITEWRHNWAASVNQALEQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKEFNQQVKNYRKAKSSYKNNQEKVINRGHLDSLSKHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKDSELNERLMNIRDDLLTRQLLTFTKRPYVGWKLL
MQQEKEVKIKLKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKGLRTIMAVKQVIQTQYHEVLK
RAFPNGDLDELPMIKLEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKVDPTIKNSQIEKIQKQLKGQQAKDDQYRKVNIGHYQPLNYKPVSPSY
YLKTAFSNAIMTALYARDEDYQRQRQAQGLKEAEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   16561 GenBank   NZ_CP018325
Plasmid name   pLP12-1 Incompatibility group   -
Plasmid size   64103 bp Coordinate of oriT [Strand]   56836..56856 [+]
Host baterium   Lactiplantibacillus plantarum subsp. plantarum strain TS12

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   arsB
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -