Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 116064 |
| Name | oriT_pPLP1  |
| Organism | Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP019795 (34310..34340 [-], 31 nt) |
| oriT length | 31 nt |
| IRs (inverted repeats) | 1..7, 11..17 (ACATTGC..GCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 31 nt
>oriT_pPLP1
ACATTGCGAAGCAATGTATAAGTGCGCCCTT
ACATTGCGAAGCAATGTATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10273 | GenBank | WP_149867823 |
| Name | mobQ_B1222_RS23320_pPLP1 |
UniProt ID | _ |
| Length | 224 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 224 a.a. Molecular weight: 26403.84 Da Isoelectric Point: 8.9744
>WP_149867823.1 MobQ family relaxase [Paenibacillus larvae]
MAIYHFSMQVAKRSNGSSSIAMAAYRSGEKLFEERTGETKHYKRKVQPETMILAPKHAPSWVQNRNRLWN
EVEKAEKRVDAQLCREFNLALPKELNKEEQRKLIHDFCKEQLVDRGMIADIAIHRDDEQNPHAHVMLTMR
DIKDDGFGKKNRDWNDKELMKSWREEWANYANRSLERAGFSERIDHRSLAEQGIDRIPTIHEGPKVREME
ERGVTTDRGTFREK
MAIYHFSMQVAKRSNGSSSIAMAAYRSGEKLFEERTGETKHYKRKVQPETMILAPKHAPSWVQNRNRLWN
EVEKAEKRVDAQLCREFNLALPKELNKEEQRKLIHDFCKEQLVDRGMIADIAIHRDDEQNPHAHVMLTMR
DIKDDGFGKKNRDWNDKELMKSWREEWANYANRSLERAGFSERIDHRSLAEQGIDRIPTIHEGPKVREME
ERGVTTDRGTFREK
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 12007 | GenBank | WP_077997716 |
| Name | t4cp2_B1222_RS23330_pPLP1 |
UniProt ID | _ |
| Length | 585 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 585 a.a. Molecular weight: 66364.18 Da Isoelectric Point: 6.3791
>WP_077997716.1 VirD4-like conjugal transfer protein, CD1115 family [Paenibacillus larvae]
MRIKILKIVIALAFLFLIDLYVIALLAIYITNQTLADNIMDYVEHPFFTMSNVLSPAAEGIEYDIHKNWL
NLQVVYLGLIVLAAMKLFFKRNTSAKDASDYGAHGTARWANDSEIKSWWHHPIDIPGLFLGKDEKKYCIH
PESSELNQHAIVFGGSGTGKSRSVIIPNILKAIREGKSIVVTDTKGTVYNQTANMLRKKGYAIRVLNYLK
PKQSSCYNRLDFVKDMSDAIKLSNTIIENSSNRHASSDEMWRNAEQSYITACILYVKSVRPPSEQHMSSV
LAFGVWGAGNPELMDFLFSQLPYSHPAKQMYNIFRIAEDKTRTGILIGFASRLQVFLDPGIAQMWSKSDF
DLKKIGLEKTALFLLISDRDTTYKMPLALTWAGLFQDLLDEADGQPDGVLPIKVKCLMDECANIGTINNF
EQITSTARSRGVEIVPIFQSLPQLKNRYDKERWAEIMSNMDTILYLGTNDLETAKYFSQIIGPTTLMVQS
YIGRDSGNGGMNENYVGRPLMQPSELRQWDRTKMIVLQNGKNPAALYKVDYTELEPDLNLEDWRTITEHN
FSVQISDYGQLFVQEYGHLLEEVES
MRIKILKIVIALAFLFLIDLYVIALLAIYITNQTLADNIMDYVEHPFFTMSNVLSPAAEGIEYDIHKNWL
NLQVVYLGLIVLAAMKLFFKRNTSAKDASDYGAHGTARWANDSEIKSWWHHPIDIPGLFLGKDEKKYCIH
PESSELNQHAIVFGGSGTGKSRSVIIPNILKAIREGKSIVVTDTKGTVYNQTANMLRKKGYAIRVLNYLK
PKQSSCYNRLDFVKDMSDAIKLSNTIIENSSNRHASSDEMWRNAEQSYITACILYVKSVRPPSEQHMSSV
LAFGVWGAGNPELMDFLFSQLPYSHPAKQMYNIFRIAEDKTRTGILIGFASRLQVFLDPGIAQMWSKSDF
DLKKIGLEKTALFLLISDRDTTYKMPLALTWAGLFQDLLDEADGQPDGVLPIKVKCLMDECANIGTINNF
EQITSTARSRGVEIVPIFQSLPQLKNRYDKERWAEIMSNMDTILYLGTNDLETAKYFSQIIGPTTLMVQS
YIGRDSGNGGMNENYVGRPLMQPSELRQWDRTKMIVLQNGKNPAALYKVDYTELEPDLNLEDWRTITEHN
FSVQISDYGQLFVQEYGHLLEEVES
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 16497 | GenBank | NZ_CP019795 |
| Plasmid name | pPLP1 | Incompatibility group | - |
| Plasmid size | 60858 bp | Coordinate of oriT [Strand] | 34310..34340 [-] |
| Host baterium | Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |