Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 115982
• Name: oriT_102426|unnamed1
• Organism: Pasteurella multocida strain 102426
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP135195 (1630..1658 [+], 29 nt)
• oriT length: 29 nt
• IRs (inverted repeats): 2..10, 14..22 (CAGTTTCTC..GAGAAACTG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 29 nt

>oriT_102426|unnamed1
CCAGTTTCTCGCAGAGAAACTGATAAGTG

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_RQR13_RS11315_102426|unnamed1

• ID: 10221
• GenBank: WP_012881329
• Name: MobA_MobL_RQR13_RS11315_102426|unnamed1
• UniProt ID: Q3HYC7
• Length: 450 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 450 a.a.
• Molecular weight: 53596.85 Da
• Isoelectric Point: 8.4078

>WP_012881329.1 MULTISPECIES: MobA/MobL family protein [Pasteurellaceae]
MAIYHLNVRYCSKSKGQSAQAKNEYINRNDKYSKRLDDLQFSGFGNMPKFAENNPQKFWQASDIYERANA
RVCTEIVFALPRELNLEQQQELVQSFINSTVNSERNKLPYSFAIHNDKANNNPHCHLIFSERQLDGIERS
EEQFFKRANSKNAELGGTKKTADFRDRDFIKAVRKTWSEQANFSLEKHGHTARIDERSYQEQGIDKEPRA
RLDRVTWQELQRLEENAEFFAEVIERKQNQIEQEKVEITKNTPKNTLEPFSQKDDIKHEQIKKVAENRKE
SVSQAEFDRFLIENWLEPNQKFINACEKRAKMRSEWEQYGKDLERINGDYKALNEKKQGLFGLWETKEQK
QTKQELESEYYRIKALRKEKAEEHDTYNDKINQYEKDTIEPLRKQIEQMKADNPHLEQRNHQQLMAMKFK
GLEQWAKDKLQREQSQKRQISHSKDSDLSL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (21-211)

Protein structure

• AlphaFold DB: Q3HYC7

Host bacterium

• ID: 16415
• GenBank: NZ_CP135195
• Plasmid name: 102426|unnamed1
• Incompatibility group: -
• Plasmid size: 6205 bp
• Coordinate of oriT [Strand]: 1630..1658 [+]
• Host baterium: Pasteurella multocida strain 102426

Cargo genes

• Drug resistance gene: tet(B)
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -