Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 115925 |
| Name | oriT_pCrono684-2  |
| Organism | Cronobacter sakazakii strain Crono-684 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP080596 (88052..88336 [+], 285 nt) |
| oriT length | 285 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 285 nt
>oriT_pCrono684-2
GGTTATTGCTGCTTTCTGCCGATAACAGTGCAAGTTTTGCGATTTTTTTAAGCGCTTCACAGTTCGTTAGCAAGCTCAGTTTTTTTTGATAAAATTCTGGTCAGTTTGTTTAAAAAGTGTTACAATTAAGGCGAATGGTTGAATGGTTAGTTTTAAGACTCAAATCGGCAGTATTAAAATTCCAAAAGTAGCTTTTCATACTTCAAAAAACCAAACTTTAATTTCATGTAGAAGAGTTGTACTATTGTATTGACTCAAGGACAATCCGACATGTCAGAATCAGAT
GGTTATTGCTGCTTTCTGCCGATAACAGTGCAAGTTTTGCGATTTTTTTAAGCGCTTCACAGTTCGTTAGCAAGCTCAGTTTTTTTTGATAAAATTCTGGTCAGTTTGTTTAAAAAGTGTTACAATTAAGGCGAATGGTTGAATGGTTAGTTTTAAGACTCAAATCGGCAGTATTAAAATTCCAAAAGTAGCTTTTCATACTTCAAAAAACCAAACTTTAATTTCATGTAGAAGAGTTGTACTATTGTATTGACTCAAGGACAATCCGACATGTCAGAATCAGAT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 16358 | GenBank | NZ_CP080596 |
| Plasmid name | pCrono684-2 | Incompatibility group | IncY |
| Plasmid size | 94206 bp | Coordinate of oriT [Strand] | 88052..88336 [+] |
| Host baterium | Cronobacter sakazakii strain Crono-684 |
Cargo genes
| Drug resistance gene | tet(A), qnrS1, dfrA14, blaTEM-1C, floR |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |