Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 115919 |
| Name | oriT_pMQB_Silv108.4  |
| Organism | Raoultella ornithinolytica strain MQB_Silv_108 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP104460 (434..493 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pMQB_Silv108.4
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 16352 | GenBank | NZ_CP104460 |
| Plasmid name | pMQB_Silv108.4 | Incompatibility group | Col440II |
| Plasmid size | 4665 bp | Coordinate of oriT [Strand] | 434..493 [-] |
| Host baterium | Raoultella ornithinolytica strain MQB_Silv_108 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |