Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115902
Name   oriT_AM_LB9|unnamed1 in_silico
Organism   Limosilactobacillus vaginalis strain AM_LB9
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP104400 (2287..2314 [-], 28 nt)
oriT length   28 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 28 nt

>oriT_AM_LB9|unnamed1
TAAAGTATAGTGGGTTATACCTTTCATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10180 GenBank   WP_260965098
Name   mobV_N4627_RS09190_AM_LB9|unnamed1 insolico UniProt ID   _
Length   385 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 385 a.a.        Molecular weight: 45330.42 Da        Isoelectric Point: 10.0211

>WP_260965098.1 MobV family relaxase [Limosilactobacillus vaginalis]
MSKNHYAVATMKKMKIDNLSGIFRHDFRETDNHKNQDIDPSKSNQNIELVADHKLRKRDVMDFIQKHRVG
SRKVRRDAVVLDEWIIGSDHGYFAEKSPEEVRKYFSDAIGYFAQKFGRENILYGNVHLDESTPHMHMGIV
PITKDHKLSSKRVFDRNTLREIQTEFPKYMQEHGHEVVRGSEKSQRKKLSVAEYKHAKEEQKEIEQQRIE
NFDREIELNQREGTIDNVERDILHVAKEVDPQNAPQDTISNILEWLKRFVQKLKKRLEEVTRREQNVQRQ
AKQLKQAKKELDVRNNALTRNENSVRFLVSVLKQQPTRKMTNQELLLDKLSTVKDFVKTYDEGKLEKELG
KSLDQSIQEIKTFSNPSKVPQQGLNLLNQTKDIKH

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(4-195)


  Protein structure



No available structure.




Host bacterium

ID   16335 GenBank   NZ_CP104400
Plasmid name   AM_LB9|unnamed1 Incompatibility group   -
Plasmid size   3185 bp Coordinate of oriT [Strand]   2287..2314 [-]
Host baterium   Limosilactobacillus vaginalis strain AM_LB9

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -