Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 115894
• Name: oriT_pID48908-SS1
• Organism: Streptococcus suis strain ID48908
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP135091 (472..512 [+], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): 2..8, 13..19 (ACTTTAC..GTAAAGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_pID48908-SS1
CACTTTACGGAGGTAAAGTATAGTGCGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_RMQ61_RS11715_pID48908-SS1

• ID: 10177
• GenBank: WP_313926612
• Name: mobV_RMQ61_RS11715_pID48908-SS1
• UniProt ID: _
• Length: 500 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 500 a.a.
• Molecular weight: 58811.13 Da
• Isoelectric Point: 5.5446

>WP_313926612.1 MobV family relaxase [Streptococcus suis]
MSYLVARMQKMKAGNLGGAYKHNERVFEMHSNKDIDPSRSHLNYELTDRDRLVSYEKQIKDYVNENKISN
RAIRKDAVLCDEWIITSDKPFFEKLSEEETREFFETAKNYFAENYGLENIAYASVHLDESTPHMHMGVVP
FQDGKLSSKAMFDKEELKKIQEDLPKYMNEHGFELSRGQLGSDRKHLSVADYKAKIGEEALNKELLGLGA
PQYWHREEDRPATTEEISGFESLFSLFSEEEFKIREATLEERFKWLDSHRNDLKGDLSRLEGLVDKKVEE
YAKIDSKAFERLSELSELETSIKYREKELKGLESDSERLSYKVVRLEKEHRETTQLLGEQSMSLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEIVEKLEQAINQNEVLRKALEGMKQAKE
RAERELSQEEWKNQRLETENQNLRQENKELKVSKKLLEDIQEVITEKEVNSLNKRLDELRESRMASRRRY
EPERSKGRSI

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 16327
• GenBank: NZ_CP135091
• Plasmid name: pID48908-SS1
• Incompatibility group: -
• Plasmid size: 4700 bp
• Coordinate of oriT [Strand]: 472..512 [+]
• Host baterium: Streptococcus suis strain ID48908

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -