Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 115893
• Name: oriT_pSSID26102
• Organism: Streptococcus suis strain ID26102
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP135088 (4357..4397 [-], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): 2..8, 13..19 (ACTTTAC..GTAAAGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_pSSID26102
CACTTTACGGAGGTAAAGTATAGTGCGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_RMP67_RS11970_pSSID26102

• ID: 10176
• GenBank: WP_313921465
• Name: mobV_RMP67_RS11970_pSSID26102
• UniProt ID: _
• Length: 500 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 500 a.a.
• Molecular weight: 58787.06 Da
• Isoelectric Point: 5.5446

>WP_313921465.1 MobV family relaxase [Streptococcus suis]
MSYLVARMQKMKAGNLGGAYKHNERVFEMHSNKDIDPSRSHLNYELTDRDRLVSYEKQIKDYVNENKISN
RAIRKDAVLCDEWIITSDKPFFEKLSEEETREFFETAKNYFAENYGLENIAYASVHLDESTPHMHMGVVP
FQDGKLSSKAMFDKEELKKIQEDLPKYMNEHGFELSRGQLGSDRKHLSVADYKAKIGEEALNKELLGLGA
PQYWHREEDRPATTEEISGFESLFSLFSEEEFKIREATLEERFKWLDSHRNDLKGDLSRLEGLVDKKVEE
YAKIDSKAFERLSELSELETSIKYREKELKGLESYSERLSDKVVRLEKEHRETTQLLGEQSMSLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQAINQNEVLRKALEGMKQAKE
RAERELSQEEWKNQRLETENQNLRQENKELKVSKKLLEDIQEVITEKEVNSLNKRLDELRESRMASRRRY
ESERSKGRSI

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 16326
• GenBank: NZ_CP135088
• Plasmid name: pSSID26102
• Incompatibility group: -
• Plasmid size: 4717 bp
• Coordinate of oriT [Strand]: 4357..4397 [-]
• Host baterium: Streptococcus suis strain ID26102

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -